Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015864499.1_cds_XP_016516019.1_28304
CDS Infomation

[gene=LOC107832672] [db_xref=GeneID:107832672] [protein=cyprosin-like] [protein_id=XP_016516019.1] [location=join(4496..4861,5142..5202,5311..5405,5505..5617,5731..5899,5988..6027,6163..6227,6331..6444,6527..6591,7220..7373,7450..7569,7875..7963,8160..8244)] [gbkey=CDS]
Sequence

ATGGAAAGGAAGCATCTTTGGGCTGCTCTCCTTTTATTGGCCATTGCCTGCTTTGTATTT
CCTGCTTCCTCTGATAGTTTGCTAAGAATTAGTCTGAAGAAGCGACAATTAGATATCAGT
AGCTTAAATGCAGCCAATGTAGCTAGACTTGAAGACAGATATGGGAAGCATGTGATGAAG
GACATACAAAAGAAGAAGAAGAAGAAGAAATCTGACAAAGATTCAGATATCGTCTCCTTA
AAGAACTATTTGGATGCTCAATATTATGGAGAGATTAGTATTGGTTCACCCCCTCAAAAT
TTCACTGTCATATTTGATACAGGGAGTTCTAATCTCTGGGTTCCATCATCAAGATGTTAT
TTCTCTATTGCATGCTGGATCCATTCCAAGTACAAGGCACGCAAGTCTAGTACATACACA
AAAAAAGGAGAATCTTGTTCAATCCACTATGGATCTGGATCAATTTCAGGATTTCTTAGT
CAAGATAATGTTCAAGTTGGTGACCTTCTAGTCACGGATCAGGTCTTTATCGAGGCGACA
CGAGAACCAAGTATTACATTTATAGTGGCAAAGTTTGATGGAATACTTGGGCTTGGTTTC
AAGGAAATTGCTGTTGGAAACACTACACCTCTCTGGTACAATATGGTGAAGCAAGATCTC
GTAAAGGAGCCTGTGTTCTCTTTCTGGCTTAATCGCGATACAAATGCAAAAGAGGGAGGT
GAACTTGTTTTTGGTGGTGTTGATCCAAAACACTTCAAGGATAAACATACTTATGTTCCT
TTGACTCAGAAAGGTTACTGGCAGTTTAAAATGGGAGATTTCTCTATTGGGAACCAATCA
ACAGGCTTTTGTGAAGGCGGTTGTGCTGCTATAGTGGATTCTGGAACATCATTGCTTGCT
GGTCCAACTGCTGTTGTGACACAAGTCAACCATGCCATTGGAGCAGAAGGAGTATTGAGC
ATGGAATGTAAAGAAACCATTTCTCAATATGGGGAAATGATTTGGGATTTACTAGTATCA
GGGGTTACAGCTGATCAAATTTGTTTACAAGCAGGTTTATGTTATCTTAATGGAGCTCAG
CATTTCAGCTCGAATATCAGAACAGTCGTTGAGAAGGAAAATGAAGGAAGTTCCATAGGA
GAAGCCCCATTGTGCACTGCCTGTGAGATGGCTGTAATTTGGATGCAGAACCAGCTCAAA
CAGAAGACAACAAAGGAGAGTGTGATAGAATATGTGAATCAGCTCTGTGAGAAATTACCA
AGTCCTACGGGACAATCTGTAATCGACTGCAATAGCATATCATCCATGCCAAATGTTACA
TTCAATATTGGTGATAAGGATTTTGTCCTCACTCCAGAACAGTATATTTTGAAAACTGGG
GAGGGGATTGCTACCATTTGCCTCAGTGGGTTTGTTGCTTTGGATGTGCCACCACCTCGT
GGTCCTCTTTGGATTCTTGGTAATGTATTCATGGGGGTGTATCATACTGTATTTGACTAT
GGTAATCTTCAACTGGGTTTTGCTGAAGCCGCGTGA

Peptide Sequence

PEP ID

XP_016516019.1
PEP Infomation

PREDICTED: cyprosin-like [Nicotiana tabacum]
Sequence

MERKHLWAALLLLAIACFVFPASSDSLLRISLKKRQLDISSLNAANVARLEDRYGKHVMK
DIQKKKKKKKSDKDSDIVSLKNYLDAQYYGEISIGSPPQNFTVIFDTGSSNLWVPSSRCY
FSIACWIHSKYKARKSSTYTKKGESCSIHYGSGSISGFLSQDNVQVGDLLVTDQVFIEAT
REPSITFIVAKFDGILGLGFKEIAVGNTTPLWYNMVKQDLVKEPVFSFWLNRDTNAKEGG
ELVFGGVDPKHFKDKHTYVPLTQKGYWQFKMGDFSIGNQSTGFCEGGCAAIVDSGTSLLA
GPTAVVTQVNHAIGAEGVLSMECKETISQYGEMIWDLLVSGVTADQICLQAGLCYLNGAQ
HFSSNIRTVVEKENEGSSIGEAPLCTACEMAVIWMQNQLKQKTTKESVIEYVNQLCEKLP
SPTGQSVIDCNSISSMPNVTFNIGDKDFVLTPEQYILKTGEGIATICLSGFVALDVPPPR
GPLWILGNVFMGVYHTVFDYGNLQLGFAEAA

Transcript Sequence

Gene sequence data has not been registered.